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rcromwell

High level overview of package

rcromwell rcromwell-package
rcromwell: Convenience Tools for Managing WDL Workflows via Cromwell

Settings

cromwell_settings
Cromwell Settings
cromwell_config()
Cromwell Configuration

Cromwell server introspection

cromwell_version()
Get the version of a Cromwell server
cromwell_backends()
Get the available backends of a Cromwell server

Validate files

cromwell_validate()
Validates a workflow for submission

Workflows

cromwell_workflow()
Pull metadata for a specific Cromwell workflow job
cromwell_abort()
Abort a workflow job on Cromwell
cromwell_cache()
Pull Cromwell Call Caching Data
cromwell_call()
Retrieve metadata for the calls made in a Cromwell workflow job
cromwell_failures()
Pull metadata for the failed calls made in a Cromwell workflow job
cromwell_glob()
Pull a glob of metadata for a specific Cromwell workflow job
cromwell_jobs()
Requests metadata about Cromwell workflow jobs during a time period specified
cromwell_labels()
Cromwell labels for a workflow
cromwell_logs()
Gets logs for a workflow in Cromwell
cromwell_outputs()
Gets outputs for a workflow in Cromwell
cromwell_submit_batch()
Submit a workflow job to Cromwell
cromwell_timing()
Get a timing diagram for a Cromwell workflow
workflow_options()
Pull the workflow options provided for a Cromwell workflow job
workflow_inputs()
Pull the workflow inputs provided for a Cromwell workflow job

Helpers

cw_url()
Look for Cromwell URL as the env var CROMWELLURL