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Gets outputs for a workflow in Cromwell

Source: R/cromwellOutputs.R
cromwell_outputs.Rd

Gets outputs for a workflow in Cromwell

Usage

cromwell_outputs(workflow_id, url = cw_url(), token = NULL)

Arguments

workflow_id

(character) A single workflow ID

url

(character) base url for your Cromwell server. optional. if not supplied set the url as the env var CROMWELLURL

token

(character) we do not recommend passing your token here as a string. Either pass it using Sys.getenv() or save your token as the env var PROOF_TOKEN and then passing nothing to this param and we'll find it

Value

a tibble with columns:

  • workflowName

  • workflowOutputType

  • pathToOutput

  • shardIndex

  • workflow_id

Important

Requires valid Cromwell server URL to be set. See cromwell_settings

Author

Amy Paguirigan, Scott Chamberlain