Retrieve metadata for the calls made in a Cromwell workflow job

Retrieve and process call metadata for a specific workflow.

Usage

cromwell_call(workflow_id, url = cw_url(), token = NULL)

Arguments

workflow_id: (character) A single workflow ID
url: (character) base url for your Cromwell server. optional. if not supplied set the url as the env var CROMWELLURL
token: (character) we do not recommend passing your token here as a string. Either pass it using Sys.getenv() or save your token as the env var PROOF_TOKEN and then passing nothing to this param and we'll find it

Value

Returns a long form data frame of metadata on calls. NOTE: does not currently support subWorkflows well yet.

Details

Now supports nested scatters.

Important

Requires valid Cromwell server URL to be set. See cromwell_settings

Author

Amy Paguirigan, Scott Chamberlain

Examples

if (FALSE) { # \dontrun{
## Request what jobs have been submitted to your Cromwell instance in the
## past 7 days.
recentJobs <- cromwell_jobs(days = 7)
## Request workflow metadata for a specific job that was run in your
## Cromwell instance.
thisWorkflowID <- recentJobs$workflow_id[1]
callsMeta <- cromwell_call(workflow_id = thisWorkflowID)
} # }