Pull metadata for a specific Cromwell workflow job — cromwell

Retrieve and process all labels, submission and workflow level metadata for a specific workflow.

Usage

cromwell_workflow(workflow_id, url = cw_url(), token = NULL)

Arguments

workflow_id: (character) A single workflow ID
url: (character) base url for your Cromwell server. optional. if not supplied set the url as the env var CROMWELLURL
token: (character) we do not recommend passing your token here as a string. Either pass it using Sys.getenv() or save your token as the env var PROOF_TOKEN and then passing nothing to this param and we'll find it

Value

a tibble of metadata on a workflow. if no results a zero row tibble

Important

Requires valid Cromwell server URL to be set. See cromwell_settings

Author

Amy Paguirigan

Examples

if (FALSE) { # \dontrun{
## Request what jobs have been submitted to your Cromwell instance in the
## past 7 days.
recentJobs <- cromwell_jobs(days = 7)
## Request workflow metadata for a specific job that was run in your
## Cromwell instance.
thisWorkflowID <- recentJobs$workflow_id[1]
workflowMeta <- cromwell_workflow(workflow_id = thisWorkflowID)
} # }