Function reference • rcromwell

rcromwell

High level overview of package

rcromwell rcromwell-package: rcromwell: Convenience Tools for Managing WDL Workflows via Cromwell

Settings

cromwell_settings: Cromwell Settings

cromwell_config(): Cromwell Configuration

Cromwell server introspection

cromwell_version(): Get the version of a Cromwell server

cromwell_backends(): Get the available backends of a Cromwell server

Validate files

cromwell_validate(): Validates a workflow for submission

Workflows

cromwell_workflow(): Pull metadata for a specific Cromwell workflow job

cromwell_abort(): Abort a workflow job on Cromwell

cromwell_cache(): Pull Cromwell Call Caching Data

cromwell_call(): Retrieve metadata for the calls made in a Cromwell workflow job

cromwell_failures(): Pull metadata for the failed calls made in a Cromwell workflow job

cromwell_glob(): Pull a glob of metadata for a specific Cromwell workflow job

cromwell_jobs(): Requests metadata about Cromwell workflow jobs during a time period specified

cromwell_logs(): Gets logs for a workflow in Cromwell

cromwell_outputs(): Gets outputs for a workflow in Cromwell

cromwell_submit_batch(): Submit a workflow job to Cromwell

cromwell_timing(): Get a timing diagram for a Cromwell workflow

workflow_options(): Pull the workflow options provided for a Cromwell workflow job

workflow_inputs(): Pull the workflow inputs provided for a Cromwell workflow job

Helpers

cw_url(): Look for Cromwell URL as the env var CROMWELLURL